PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G130500.4
Common NameB456_004G130500, LOC105791315
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 715aa    MW: 77794.6 Da    PI: 6.0933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G130500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.2e-056136511355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLr ++P++    +k ls    Le++++Y+  Lq
  Gorai.004G130500.4 613 RQLIQDRIKELRGIIPHS----GKQLSIDHLLERTIKYLLFLQ 651
                         67799************9....777***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-71048IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142153.0E-1559149IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.858600650IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-5613656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-4613660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MGEVAMGSAL KQTLKNLCCS NGWCYGVFWR FDPRNSMLLT MEDAYYEQKM GPLVDKMLLK  60
FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNEKIFQ DESELQVQFS SGIKTIAVIS  120
VGRRGVVQFG STKKILERLE LLAETEKLFY DMGSCHGLTP LEIETCNLDG WFTSFILGQN  180
PTTEQGGCSV EPTGWSCSLQ SLIEPSCSVH DYSMNSVQQN LSHLTSQIQT ISIEAQPISA  240
GKISRVNSLA ANTPCTSEGS ILTSLPGEKG EWDPSIVFPK KDTEQNLQGH STFTSFYSTG  300
ELVDSELHNL DSFGKTKQEQ HSFGTNAGLL DSVISQQRSI EEFNLDDFIT DLSSSFTMDD  360
FSQWFSPLPQ HHIHGAGATT TTDPSCSVGV TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA  420
DALTSSVEKS TMVHDNGNDL FSGTGMDFRL RKAGELSENI DMPLLHSANK VVASGMSSSM  480
AGKRKGLFSE LGLEELLGGV NNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC  540
SGGGMNLAQH SHTWDKSNDT IFSKEFHLKS QVGLWIDDSY GVKAGNAVVT TAKKPTRKRA  600
KPGESSRPRP KDRQLIQDRI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADEI  660
KQADEPKLIG QGNRKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474800.10.0PREDICTED: transcription factor bHLH157 isoform X3
TrEMBLA0A0D2MXP40.0A0A0D2MXP4_G
STRINGVIT_02s0025g02310.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.39e-26conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]